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?Epigenome association study
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By shengliu, Section Biology Posted on Fri Apr 30th, 2010 at 04:15:43 PM PST
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In the process of disease initiation, there are bunch of genes been inactivated through
epigenetic approach, such as DNA methylation or histone modification. The example
include MLH1 methylaiton in colorectal cancer. This idea is to find genes inactivated in the
epigenome through populations, The approach is the same as normal Genome wide
association study (GWAS), the difference is the target.
Detail:
- Get patient sample and normal sample from some tissue, like colon.
- Get DNAs from the sample and treat with bisulfite.
- Bisulfite chip (if there is*)
- analysis of the data from patient and normal.
* Bisulfite Chip, (maybe also a new idea:). the company should make this product, their
CpG island Chip is not accurate enough to locate genes. and it is doable as what they need
to do is just bisulfite convert the sequence they usually attach to the chip)
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