Experiment Bank - The site for free exchange, review, and discussion of novel scientific experiments Front Page ? Everything ? News ? Wish list ? Help ? FAQ
?super seniors & Autophagy

cellular and molecular biology
By JLam, Section Biology
Posted on Thu Apr 29th, 2010 at 09:25:32 PM PST
Within the elderly population, there is a small percentage aged 85 or older who have never been diagnosed with cancer, cardiovascular disease, major pulmonary disease, diabetes or Alzhemier disease. Therefore, these individuals have been coined as "super-seniors". Not surprising, there is great interest as to what factors or genes may play a role in their superior health.

First shown in the 1960's, cells are able to undergo a process known as autophagy where cells can recycle old or damaged proteins. Autophagy ("self-eating") is a tightly regulated catabolic process where the cell degrades its own cellular components through its lysosomal machinery. Autophagy is responsible for the degradation of long lived proteins and organelles, as well as the maintenance of cell homeostasis. Similarly, autophagy has been shown to play a physiological role in the defence against metabolic stress, DNA damage, and chromosomal instability. Briefly, this process is accomplished through the formation of double membrane vesicles called autophagosomes which engulf cytoplasm and organelles. These autophagosomes then fuse with lysosomes to form autolysosomes where degradation occurs [16]. The genes involved in this process are unified under the common name of Atg (autophagy-related) where key autophagy genes include Atg6 (Beclin-1), Atg7, Atg8 (LC3) and Atg12. There is accumulating evidence that this process can allow the cell to survive harsh conditions by activating this process and has also been linked to healthy aging. The autophagy gene Beclin-1 has also been shown to be a haploinsufficient tumor suppressor.

Therefore, it is my hypothesis that these super seniors have greater levels of autophagy. To test this, I propose to do an array comparative genomic hybridization (arrayCGH) or high-resuloution CGH study where we look for copy number variations of essential autophagy genes such as Beclin-1. Since these super seniors are healthy, the control group will not be age matched. However, the group will try to be matched based on other variables such as sex, ethnicity, their current health/fitness and occupation in order to get as similar a group as possible. In addition, the sample sizes will have to be quite large to account for the heterogeneity in the test and control populations.

 

< Identifying genetic factors associated with Trastuzumab-induced cardiotoxicity (2 comments) | Pharmacogenomics in Africa (2 comments) >



View: Display: Sort:
super seniors & Autophagy | 2 comments (2 topical, 0 editorial)
[new] gene expression (none / 0) (#1)
by smile on Thu Apr 29th, 2010 at 11:32:56 PM PST
(User Info)

Interesting idea! Will you consider to do SAGE library for looking at those autophagy gene expression? Sometimes the genes copy number might be the same, but the expression are highly varied due to methylation of histones or other factors.



[new] gene expression (none / 0) (#2)
by JLam on Fri Apr 30th, 2010 at 12:57:37 PM PST
(User Info)

Good point Smile. I agree, SAGE would be another good way to look mRNA levels/gene expression.

[ Parent ]


super seniors & Autophagy | 2 comments (2 topical, 0 editorial)
View: Display: Sort:
?+?Menu
? create account
? faq
? search

?+?Login
Make a new account
Username:
Password:

?+?Related Links
? More on cellular and molecular biology
? Also by JLam

BC Cancer Agency Genome Sequence Centre SourceForge Logo Powered by Scoop
All trademarks and copyrights on this page are owned by their respective companies. Comments are owned by the Poster. The Rest ? 1999 The Management

create account | faq | search